Semantic search

This page or action requires JavaScript to work, please enable JavaScript in your browser or use a browser where this is supported so that functionality can be served and is provided as requested. For further assistance, please have a look at the noscript help page.

Options | Search Clear all entries |

Condition

Printout selection

Options

Parameters [+]

limit:

The maximum number of results to return

offset:

The offset of the first result

link:

Show values as links

headers:

Display the headers/property names

mainlabel:

The label to give to the main page name

intro:

The text to display before the query results, if there are any

outro:

The text to display after the query results, if there are any

searchlabel:

Text for continuing the search

default:

The text to display if there are no query results

class:

An additional CSS class to set for the table

transpose:

Display table headers vertically and results horizontally

sep:

The separator between results

Sort options

Delete

Add sorting condition

ResultCodeDebugExtra

To embed this query inline into a wiki page use the code below.

{{#ask: [[Category:Publications]] [[Pathways::F]]
 |?Was published in year=Year
 |?Has title=Reference
 |?Coupling states=Coupling
 |?Pathways=Pathway
 |?Preparation
 |?Mammal and model=Organism
 |?Tissue and cell=Tissue;cell
 |format=broadtable
 |limit=50
 |offset=500
 |sort=
 |order=asc
 |mainlabel=
}}

Results 501 – 550 previous 50 20 50 100 250 500 next 50

JSON CSV RSS RDF

Query log

{
    "query_string": "[[Category:Publications]] [[Pathways::F]]",
    "query_source": "SMWSQLStore",
    "query_time": "0.0315",
    "from_cache": false
}

Debug output SQLStore

ASK Query

[[Category:Publications]] [[Pathways::F]]

SQL Query

SELECT DISTINCT
t0.smw_id AS id,
  t0.smw_title AS t,
  t0.smw_namespace AS ns,
  t0.smw_iw AS iw,
  t0.smw_subobject AS so,
  t0.smw_sortkey AS sortkey, t0.smw_sort
FROM
`smw_object_ids` AS t0
INNER JOIN
(`smw_fpt_inst` AS t2
INNER JOIN
`t3` AS t3 ON t2.o_id=t3.id
INNER JOIN
`smw_di_blob` AS t4 ON t2.s_id=t4.s_id) ON t0.smw_id=t2.s_id
WHERE
(
   ((t4.o_hash='F') AND t4.p_id=80959)
  )
  AND t0.smw_iw!=':smw'
  AND t0.smw_iw!=':smw-delete'
  AND t0.smw_iw!=':smw-redi'
ORDER BY
t0.smw_sort ASC
LIMIT
55
OFFSET
500

SQL Explain

ID	select_type	table	type	possible_keys	key	key_len	ref	rows	filtered	Extra
1	SIMPLE	t4	ref	s_id, p_id, s_id_2, o_hash	p_id	262	const, const	755	100.00	Using index condition; Using temporary; Using filesort

Auxilliary Tables

Temporary table t3
Recursively computed hierarchy for element(s) (80971).
SELECT s_id FROM `smw_fpt_subc` WHERE o_id=80971 LIMIT 1

Query Metrics

Query-Size:3
Query-Depth:1

Errors and Warnings

None

	Year	Reference	Coupling	Pathway	Preparation	Organism	Tissue;cell
Nelskylae 2017 Resuscitation	2017	Nelskylä A, Nurmi J, Jousi M, Schramko A, Mervaala E, Ristagno G, Skrifvars MB (2017) The effect of 50% compared to 100% inspired oxygen fraction on brain oxygenation and post cardiac arrest mitochondrial function in experimental cardiac arrest. Resuscitation 116:1-7.	OXPHOS ET	F N S NS	Homogenate	Pig	Heart
Nemec 2017 Abstract MITOEAGLE Barcelona		Functional state of mitochondria in patients with preclinical cognitive deficit.	OXPHOS ET	F	Permeabilized tissue	Human	Skeletal muscle
Nemec 2018 MiP2018		Aerobic/strength exercise intervention modulates skeletal muscle mitochondrial function in seniors.	LEAK	F N NS Other combinations	Permeabilized tissue	Human	Skeletal muscle
Neviere 2015 Fatty Acid Oxidation O2k-Network Discussion Forum		Neviere 2015 Fatty Acid Oxidation O2k-Network Discussion Forum		F	Permeabilized tissue	Human Mouse
Newell 2016 Physiol Entomol	2016	Newell C, Kane CL, Kane DC (2016) Mitochondrial substrate specificity in beetle flight muscle: assessing respiratory oxygen flux in small samples from Dermestes maculatus and Tenebrio molitor. Physiol Entomol p7.	OXPHOS	F N Gp Other combinations	Permeabilized tissue	Hexapods	Skeletal muscle
Newsom 2017 Am J Physiol Endocrinol Metab	2017	Newsom SA, Miller BF, Hamilton KL, Ehrlicher SE, Stierwalt HD, Robinson MM (2017) Long-term rates of mitochondrial protein synthesis are increased in mouse skeletal muscle with high fat feeding regardless of insulin sensitizing treatment. Am J Physiol Endocrinol Metab 313:552-62.	LEAK OXPHOS ET	F N S NS ROX	Isolated mitochondria	Mouse	Skeletal muscle
Newsom 2021 Med Sci Sports Exerc	2021	Newsom SA, Stierwalt HD, Ehrlicher SE, Robinson MM (2021) Substrate-specific respiration of isolated skeletal muscle mitochondria after 1 h of moderate cycling in sedentary adults. https://doi.org/10.1249/mss.0000000000002615	LEAK OXPHOS ET	F N S NS ROX	Isolated mitochondria	Human	Skeletal muscle
Nijholt 2023 Sci Rep	2023	Nijholt KT, Sánchez-Aguilera PI, Mahmoud B, Gerding A, Wolters JC, Wolters AHG, Giepmans BNG, Silljé HHW, de Boer RA, Bakker BM, Westenbrink BD (2023) A Kinase Interacting Protein 1 regulates mitochondrial protein levels in energy metabolism and promotes mitochondrial turnover after exercise. https://doi.org/10.1038/s41598-023-45961-z	LEAK OXPHOS ET	F N	Isolated mitochondria	Mouse	Heart
Nollet 2023 Eur Heart J	2023	Nollet EE, Duursma I, Rozenbaum A, Eggelbusch M, Wüst RCI, Schoonvelde SAC, Michels M, Jansen M, van der Wel NN, Bedi KC, Margulies KB, Nirschl J, Kuster DWD, van der Velden J (2023) Mitochondrial dysfunction in human hypertrophic cardiomyopathy is linked to cardiomyocyte architecture disruption and corrected by improving NADH-driven mitochondrial respiration. https://doi.org/10.1093/eurheartj/ehad028	LEAK OXPHOS ET	F N S NS ROX	Permeabilized tissue	Human	Heart
Noone 2023 Cell Signal	2023	Noone J, Rochfort KD, O'Sullivan F, O'Gorman DJ (2023) SIRT4 is a regulator of human skeletal muscle fatty acid metabolism influencing inner and outer mitochondrial membrane-mediated fusion. https://doi.org/10.1016/j.cellsig.2023.110931	LEAK OXPHOS	F N ROX	Permeabilized cells	Human	Skeletal muscle
Nsiah-Sefaa 2016 Biosci Rep	2016	Nsiah-Sefaa A, McKenzie M (2016) Combined defects in oxidative phosphorylation and fatty acid β-oxidation in mitochondrial disease. Biosci Rep 36:e00313. https://doi.org/10.1042/BSR20150295		F
O'Brien 2017 Abstract IOC122		PPARα independent effects of nitrate supplementation on skeletal muscle mitochondrial function in hypoxia.	LEAK OXPHOS	F		Mouse	Skeletal muscle
Oemer 2018 Proc Nat Acad Sci U S A	2018	Oemer G, Lackner L, Muigg K, Krumschnabel G, Watschinger K, Sailer S, Lindner H, Gnaiger E, Wortmann SB, Werner ER, Zschocke J, Keller MA (2018) The molecular structural diversity of mitochondrial cardiolipins. Proc Nat Acad Sci U S A 115:4158-63.	LEAK ROUTINE OXPHOS ET	F N S Gp CIV NS ROX	Intact cells Permeabilized cells	Human	HeLa
Ofer 2015 Mol Endocrinol	2015	Ofer P, Heidegger I, Eder IE, Schöpf B, Neuwirt H, Geley S, Klocker H, Massoner P (2015) Both IGF1R and INSR knockdown exert anti-tumorigenic effects in prostate cancer in vitro and in vivo. Mol Endocrinol 29:1694-707.	ROUTINE OXPHOS ET	F N NS	Permeabilized cells Intact cells	Human	Genital Other cell lines
Ojuka 2015 Fatty Acid Oxidation O2k-Network Discussion Forum		Ojuka 2015 Fatty Acid Oxidation O2k-Network Discussion Forum	OXPHOS ET	F	Permeabilized tissue
Ojuka 2016 Am J Physiol Endocrinol Metab	2016	Ojuka E, Andrew B, Bezuidenhout N, George S, Maarman G, Madlala HP, Mendham A, Osiki PO (2016) Measurement of β-oxidation capacity of biological samples by respirometry: a review of principles and substrates. Am J Physiol Endocrinol Metab 310:E715-23. https://doi.org/10.1152/ajpendo.00475.2015	LEAK OXPHOS ET	F	Permeabilized tissue Isolated mitochondria	Human Mouse Rat	Skeletal muscle Liver
Oliveira 2016 PLOS ONE	2016	Oliveira MP, Correa Soares JB, Oliveira MF (2016) Sexual preferences in nutrient utilization regulate oxygen consumption and reactive oxygen species generation in Schistosoma mansoni: potential implications for parasite redox biology. PLOS ONE 11:e0158429.	LEAK ROUTINE	F ROX	Intact organism	Other invertebrates
Oliveira MF 2013 Abstract MiP2013		Oliveira MF (2013) Comparative mitochondrial physiology in blood feeding insect vectors and parasites. Mitochondr Physiol Network 18.08.	LEAK ROUTINE OXPHOS ET	F N S Gp CIV ROX	Intact organism Intact organ Permeabilized cells Permeabilized tissue Homogenate Intact cells	Human Drosophila Hexapods Other invertebrates	Skeletal muscle Neuroblastoma
Osiki 2016 Abstract MitoFit Science Camp 2016		Suitability of octanoylcarnitine & malate for assessment of beta oxidation capacity by respirometry in aconitase-inhibited samples.	OXPHOS ET	F N Other combinations		Rat	Skeletal muscle
Osiki 2016 FASEB J	2016	Osiki PO, Ojuka E, Marmaan G (2016) An investigation of the suitability of using octanoylcarnitine together with malate as a substrate combination for assessing Beta-oxidation using High Resolution Respirometry. FASEB J 30: 1015.12 .	LEAK OXPHOS ET	F	Permeabilized tissue	Rat	Skeletal muscle
Ost 2014 PLoS One	2014	Ost M, Werner F, Dokas J, Klaus S, Voigt A (2014) Activation of AMPKa2 is not crucial for mitochondrial uncoupling-induced metabolic effects but required to maintain skeletal muscle integrity. PLoS One 14:e94689.	LEAK OXPHOS ET	F N NS	Permeabilized tissue	Mouse	Skeletal muscle
Ost 2015 Fatty Acid Oxidation O2k-Network Discussion Forum		Ost 2015 Fatty Acid Oxidation O2k-Network Discussion Forum		F	Permeabilized tissue	Mouse	Skeletal muscle
Paglialunga 2015 Diabetologia	2015	Paglialunga S, Ludzki A, Root-McCaig J, Holloway GP (2015) In adipose tissue, increased mitochondrial emission of reactive oxygen species is important for short-term high-fat diet-induced insulin resistance in mice. Diabetologia 58:1071-80.	LEAK OXPHOS	F N	Permeabilized tissue	Mouse	Fat
Pajuelo-Reguera 2011 Br J Nutr	2011	Pajuelo-Reguera D, Quesada H, Díaz S, Fernández-Iglesias A, Arola-Arnal A, Bladé C, Salvadó J, Arola L (2011) Chronic dietary supplementation of proanthocyanidins corrects the mitochondrial dysfunction of brown adipose tissue caused by diet-induced obesity in Wistar rats. Br J Nutr 28:1-9.	LEAK OXPHOS ET	F N	Isolated mitochondria	Rat	Fat
Palacka 2021 Int J Mol Sci	2021	Palacka P, Gvozdjáková A, Rausová Z, Kucharská J, Slopovský J, Obertová J, Furka D, Furka S, Singh KK, Sumbalová Z (2021) Platelet mitochondrial bioenergetics reprogramming in patients with urothelial carcinoma. https://doi.org/10.3390/ijms23010388	LEAK ROUTINE OXPHOS ET	F N S Gp NS ROX	Permeabilized cells Intact cells	Human	Platelet
Palavicini 2020 JCI Insight	2020	Palavicini JP, Chen J, Wang C, Wang J, Qin C, Baeuerle E, Wang X, Woo JA, Kang DE, Musi N, Dupree JL, Han X (2020) Early disruption of nerve mitochondrial and myelin lipid homeostasis in obesity-induced diabetes. JCI Insight 5:137286.	LEAK OXPHOS ET	F N S NS ROX	Permeabilized tissue	Mouse	Nervous system
Palm 2015 Fatty Acid Oxidation O2k-Network Discussion Forum		Palm 2015 Fatty Acid Oxidation O2k-Network Discussion Forum		F
Pambianco 2016 Cell Rep	2016	Pambianco S, Giovarelli M, Perrotta C, Zecchini S, Cervia D3, Di Renzo I, Moscheni C, Ripolone M, Violano R, Moggio M, Bassi MT, Puri PL, Latella L, Clementi E, De Palma C (2016) Reversal of defective mitochondrial biogenesis in limb-girdle muscular dystrophy 2D by independent modulation of histone and PGC-1α acetylation. Cell Rep 17:3010-23.	LEAK OXPHOS	F N S NS ROX	Permeabilized cells Isolated mitochondria Permeabilized tissue	Mouse	Skeletal muscle
Park 2018 J Clin Invest	2018	Park H, He A, Tan M, Johnson JM, Dean JM, Pietka TA, Chen Y, Zhang X, Hsu FF, Razani B, Funai K, Lodhi IJ (2018) Peroxisome-derived lipids regulate adipose thermogenesis by mediating cold-induced mitochondrial fission. J Clin Invest 129:694-711.	OXPHOS ET LEAK	F N S	Permeabilized tissue	Mouse	Fat
Pasdois 2015 Fatty Acid Oxidation O2k-Network Discussion Forum		Cannon 2015 Fatty Acid Oxidation O2k-Network Discussion Forum		F	Permeabilized tissue Isolated mitochondria
Patil 2015 J Nutr Biochem	2015	Patil YN, Dille KN, Burk DH, Cortez CC, Gettys TW (2015) Cellular and molecular remodeling of inguinal adipose tissue mitochondria by dietary methionine restriction. J Nutr Biochem 26:1235-47.	LEAK OXPHOS ET	F N S Gp ROX	Isolated mitochondria	Mouse	Skeletal muscle Liver Fat
Patil 2024 J Exp Biol	2024	Patil YN, Gnaiger E, Landry AP, Leno ZJ, Hand SC (2024) OXPHOS capacity is diminished and the phosphorylation system inhibited during diapause in an extremophile, embryos of Artemia franciscana. J Exp Biol 227:jeb.245828. https://doi.org/10.1242/jeb.245828	LEAK OXPHOS ET	F N S NS	Homogenate Isolated mitochondria	Artemia
Paulus 2022 Basic Res Cardiol	2022	Paulus MG, Renner K, Nickel AG, Brochhausen C, Limm K, Zügner E, Baier MJ, Pabel S, Wallner S, Birner C, Luchner A, Magnes C, Oefner PJ, Stark KJ, Wagner S, Maack C, Maier LS, Streckfuss-Bömeke K, Sossalla S, Dietl A (2022) Tachycardiomyopathy entails a dysfunctional pattern of interrelated mitochondrial functions. https://doi.org/10.1007/s00395-022-00949-0	OXPHOS ET	NS F ROX	Permeabilized tissue Isolated mitochondria	Rabbit	Heart
Paumelle 2019 J Hepatol	2019	Paumelle R, Haas J, Hennuyer N, Bauge E, Deleye Y, Mesotten D, Langouche L, Vanhoutte J, Cudejko C, Wouters K, Hannou SA, Legry V, Lancel S, Lalloyer F, Polizzi A, Smati S, Gourdy P, Vallez E, Bouchaert E, Derudas B, Dehondt H, Gheeraert C, Fleury S, Tailleux A, Montagner A, Wahli W, Van Den Berghe G, Guillou H, Dombrowicz D, Staels B (2019) Hepatic PPARα is critical in the metabolic adaptation to sepsis. J Hepatol 70:963-73.	OXPHOS LEAK	F N	Homogenate	Human	Liver
Pedersen 2022 Nat Commun	2022	Pedersen JS, Rygg MO, Chrøis K, Sustarsic EG, Gerhart-Hines Z, Wever Albrechtsen NJ, Serizawa RR, Kristiansen VB, Basse AL, Boilesen AEB, Olsen BH, Hansen T, Gluud LL, Madsbad S, Larsen S, Bendtsen F, Dela F (2022) Influence of NAFLD and bariatric surgery on hepatic and adipose tissue mitochondrial biogenesis and respiration. https://doi.org/10.1038/s41467-022-30629-5	LEAK OXPHOS ET	F N S CIV NS	Permeabilized tissue	Human	Liver Fat
Penniman 2019 Mol Metab	2019	Penniman CM, Suarez Beltran PA, Bhardwaj G, Junck TL, Jena J, Poro K, Hirshman MF, Goodyear LJ, O'Neill BT (2019) Loss of FoxOs in muscle reveals sex-based differences in insulin sensitivity but mitigates diet-induced obesity. Mol Metab 30:203-220.	LEAK OXPHOS ET	F N S NS	Permeabilized tissue Isolated mitochondria	Mouse	Skeletal muscle
Pereira da Silva Grilo da Silva 2018 MiP2018		The unspecific effect of etomoxir on mitochondrial respiration.	OXPHOS ET	F N S NS Other combinations	Permeabilized cells Isolated mitochondria	Human Mouse	Nervous system Liver Other cell lines
Perevoshchikova 2013 Free Radic Biol Med	2013	Perevoshchikova IV, Quinlan CL, Orr AL, Gerencser AA, Brand MD (2013) Sites of superoxide and hydrogen peroxide production during fatty acid oxidation in rat skeletal muscle mitochondria. Free Radic Biol Med 61:298-309. doi: 10.1016/j.freeradbiomed.2013.04.006	LEAK OXPHOS ET	F S	Isolated mitochondria	Rat	Skeletal muscle
Pereyra 2021 J Lipid Res	2021	Pereyra AS, Harris KL, Soepriatna AH, Waterbury QA, Bharathi SS, Zhang Y, Fisher-Wellman KH, Goergen CJ, Goetzman ES, Ellis JM (2021) Octanoate is differentially metabolized in liver and muscle and fails to rescue cardiomyopathy in CPT2 deficiency. J Lipid Res 62:100069.	LEAK OXPHOS	F N	Homogenate Isolated mitochondria	Mouse	Heart Skeletal muscle Liver
Pereyra 2022 Mol Metab	2022	Pereyra AS, Lin CT, Sanchez DM, Laskin J, Spangenburg EE, Neufer PD, Fisher-Wellman K, Ellis JM (2022) Skeletal muscle undergoes fiber type metabolic switch without myosin heavy chain switch in response to defective fatty acid oxidation. https://doi.org/10.1016/j.molmet.2022.101456	LEAK	F N S	Isolated mitochondria	Mouse	Skeletal muscle
Pereyra 2023 Am J Physiol Gastrointest Liver Physiol	2023	Pereyra AS, McLaughlin KL, Buddo KA, Ellis JM (2023) Medium-chain fatty acid oxidation is independent of L-carnitine in liver and kidney but not in heart and skeletal muscle. https://doi.org/10.1152/ajpgi.00105.2023	LEAK ROUTINE OXPHOS	F N	Homogenate	Mouse	Heart Skeletal muscle Liver Kidney
Permer 2017 Bachelor Thesis	2017	Permer M (2017) Respirometrische Charakterisierung kryopräservierter HEK 239T Zellen. Bachelor Thesis 1-56.	LEAK ROUTINE OXPHOS ET	F N S Gp CIV NS ROX	Permeabilized cells Intact cells	Human	Other cell lines HEK
Pesta 2010 MiP Abstract		Pesta D, Faulhaber M, Burtscher M, Gnaiger E, Schocke M (2010) Investigation of muscle metabolism of the M. quadriceps via ³¹P MRS and high-resolution respirometry in connection with 10 weeks of strength and endurance training in normoxia and hypoxia. MiP2010.	LEAK OXPHOS ET	F N S NS		Human
Pesta 2011 Am J Physiol Regul Integr Comp Physiol	2011	Pesta D, Hoppel F, Macek C, Messner H, Faulhaber M, Kobel C, Parson W, Burtscher M, Schocke M, Gnaiger E (2011) Similar qualitative and quantitative changes of mitochondrial respiration following strength and endurance training in normoxia and hypoxia in sedentary humans. Am J Physiol Regul Integr Comp Physiol 301:R1078–87.	LEAK OXPHOS ET	F N S NS	Permeabilized tissue	Human	Skeletal muscle
Pesta 2011Abstract Mitochondrial Medicine-Training		Pesta D, Hoppel F, Macek C, Messner H, Faulhaber M, Kobel C, Parson W, Burtscher M, Schocke M, Gnaiger E (2011) Mitochondrial improvements after strength, endurance, and intermittend hypoxic training in sedentary humans. A respiratory study on permeabilized muscle fibers. Abstract Mitochondrial Medicine Chicago.	LEAK OXPHOS ET	F N S NS ROX	Permeabilized tissue	Human	Skeletal muscle
Pesta 2012 Methods Mol Biol	2012	Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibers from small biopsies of human muscle. Methods Mol Biol 810:25-58. https://doi.org/10.1007/978-1-61779-382-0_3	LEAK ROUTINE OXPHOS ET	F N S NS ROX	Permeabilized cells Permeabilized tissue Intact cells	Human	Skeletal muscle Other cell lines HEK Fibroblast HUVEC
Pesta 2021 Front Endocrinol (Lausanne)	2021	Pesta D, Jelenik T, Zaharia OP, Bobrov P, Görgens S, Bódis K, Karusheva Y, Krako Jakovljevic N, Lalic NM, Markgraf DF, Burkart V, Müssig K, Knebel B, Kotzka J, Eckel J, Strassburger K, Szendroedi J, Roden M (2021) NDUFB6 polymorphism is associated with physical activity-mediated metabolic changes in type 2 diabetes. https://doi.org/10.3389/fendo.2021.693683	LEAK OXPHOS ET	F N	Permeabilized cells	Mouse	Skeletal muscle
Petrick 2019 Biochem J	2019	Petrick HL, Holloway GP (2019) High intensity exercise inhibits carnitine palmitoyltransferase-I sensitivity to L-carnitine. Biochem J 476:547-58.	OXPHOS LEAK	F N NS	Permeabilized tissue	Mouse	Skeletal muscle
Picard 2012 Am J Respir Crit Care Med	2012	Picard M, Jung B, Liang F, Azuelos I, Hussain S, Goldberg P, Godin R, Danialou G, Chaturvedi R, Rygiel K, Matecki S, Jaber S, Des Rosiers C, Karpati G, Ferri L, Burelle Y, Turnbull DM, Taivassalo T, Petrof BJ (2012) Mitochondrial dysfunction and lipid accumulation in the human diaphragm during mechanical ventilation. Am J Respir Crit Care Med 186:1140-9. https://doi.org/10.1164/rccm.201206-0982OC		F
Picard 2018 Biol Psychiatry	2018	Picard M, Prather AA, Puterman E, Cuillerier A, Coccia M, Aschbacher K, Burelle Y, Epel ES (2018) A mitochondrial health index sensitive to mood and caregiving stress. Biol Psychiatry 84:9-17. https://doi.org/10.1016/j.biopsych.2018.01.012		F		Human	Blood cells