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{{#ask: [[Category:Publications]] [[Instrument and method::Oxygraph-2k]] [[Pathways::F]]
 |?Was published in year=Year
 |?Has title=Reference
 |?Coupling states=Coupling
 |?Pathways=Pathway
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 |?Tissue and cell=Tissue;cell
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{
    "query_string": "[[Category:Publications]] [[Instrument and method::Oxygraph-2k]] [[Pathways::F]]",
    "query_source": "SMWSQLStore",
    "query_time": "0.0299",
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	Year	Reference	Coupling	Pathway	Preparation	Organism	Tissue;cell
Scott 2016 Thesis	2016	Scott KY (2016) Evaluation of cardiac mitochondrial function in the fructose-fed rat. Master's Thesis p98.	LEAK OXPHOS ET	F N S CIV ROX	Isolated mitochondria	Rat	Heart
Seillier 2015 EMBO Mol Med	2015	Seillier M, Pouyet L, N'Guessan P, Nollet M, Capo F, Guillaumond F, Peyta L, Dumas JF, Varrault A, Bertrand G, Bonnafous S, Tran A, Meur G, Marchetti P, Ravier MA, Dalle S, Gual P, Muller D, Rutter GA, Servais S, Iovanna JL, Carrier A (2015) Defects in mitophagy promote redox-driven metabolic syndrome in the absence of TP53INP1. EMBO Mol Med 7:802-18.	LEAK ROUTINE OXPHOS ET	F CIV NS ROX	Permeabilized cells Intact cells	Human Mouse	Fibroblast
Setz 2018 Hear Res	2018	Setz C, Benischke AS, Pinho Ferreira Bento AC, Brand Y, Levano S, Paech F, Leitmeyer K, Bodmer D (2018) Induction of mitophagy in the HEI-OC1 auditory cell line and activation of the Atg12/LC3 pathway in the organ of Corti. Hear Res 361:52-65.	OXPHOS ET	F N S NS ROX	Permeabilized cells	Mouse	Other cell lines
Shi 2023 Redox Biol	2023	Shi L, Tao Z, Zheng L, Yang J, Hu X, Scott K, de Kloet A, Krause E, Collins JF, Cheng Z (2023) FoxO1 regulates adipose transdifferentiation and iron influx by mediating Tgfβ1 signaling pathway. https://doi.org/10.1016/j.redox.2023.102727	LEAK ET ROUTINE	F	Intact cells	Mouse	Fat
Sidossis 2015 Cell Metab	2015	Sidossis LS, Porter C, Saraf MK, Børsheim E, Radhakrishnan RS, Chao T, Ali A, Chondronikola M, Mlcak R, Finnerty CC, Hawkins HK, Toliver-Kinsky T, Herndon DN (2015) Browning of subcutaneous white adipose tissue in humans after severe adrenergic stress. Cell Metab 22:219-27.	LEAK	F N NS Other combinations	Permeabilized cells	Human Mouse	Fat
Siewiera 2015 Platelets	2015	Siewiera K, Kassassir H, Talar M, Wieteska L, Watala C (2015) Long-term untreated streptozotocin-diabetes leads to increased expression and elevated activity of prostaglandin H₂ synthase in blood platelets. Platelets 27:203-11.		F ROX		Rat	Blood cells Platelet
Silva 2019 ESCI2019		Silva FSG, Komlodi T, Garcia-Souza LF, Bento G, Doerrier C, Oliveira PJ, Gnaiger E (2019) Can fatty acid oxidation be specifically blocked by the CPT1 inhibitor etomoxir?	OXPHOS ET	F N S	Permeabilized cells Isolated mitochondria	Human Mouse	Liver
Silva 2019 MiPschool Coimbra		Off-target effects of etomoxir on mitochondrial Complex I.	OXPHOS ET	F N Other combinations	Permeabilized cells Isolated mitochondria	Human Mouse	Liver
Sivitz 2017 Neuromethods	2017	Sivitz WI (2017) Techniques to investigate bioenergetics of mitochondria. In: Strack S, Usachev Y (eds) Techniques to investigate mitochondrial function in neurons. Neuromethods 123:67-94. Humana Press, New York. https://doi.org/10.1007/978-1-4939-6890-9_4	LEAK OXPHOS ET	F N S	Isolated mitochondria Intact cells
Slinde 2014 freepatentsonline.com	2014	Slinde E, Egelandsdal B (2014) Meat treatment and preservation method. Freepatentsonline.com 14/128207.	LEAK OXPHOS ET	F N NS ROX	Permeabilized tissue	Bovines	Skeletal muscle
Smenes 2018 Interact Cardiovasc Thorac Surg	2018	Smenes BT, Bækkerud FH, Slagsvold KH, Hassel E, Wohlwend M, Pinho M, Høydal M, Wisløff U, Rognmo Ø, Wahba A (2018) Acute exercise is not cardioprotective and may induce apoptotic signalling in heart surgery: a randomized controlled trial. Interact Cardiovasc Thorac Surg 27:95-101.	LEAK OXPHOS ET	F N S CIV NS ROX	Permeabilized tissue	Human	Heart
Smith 2016 Diabetes	2016	Smith BK, Ford RJ, Desjardins EM, Green AE, Hughes MC, Houde VP, Day EA, Marcinko K, Crane JD, Mottillo EP, Perry CG, Kemp BE, Tarnopolsky MA, Steinberg GR (2016) Salsalate (Salicylate) uncouples mitochondria, improves glucose homeostasis, and reduces liver lipids independent of AMPK β1. Diabetes 65:3352-61.	LEAK OXPHOS ET	F N NS Other combinations ROX	Permeabilized cells Isolated mitochondria Permeabilized tissue	Mouse	Skeletal muscle Liver Fat
Smith 2020 J Biol Chem	2020	Smith CD, Schmidt CA, Lin CT, Fisher-Wellman KH, Neufer PD (2020) Flux through mitochondrial redox circuits linked to nicotinamide nucleotide transhydrogenase generates counterbalance changes in energy expenditure. J Biol Chem 295:16207-16.	LEAK OXPHOS ET	F N	Isolated mitochondria	Mouse	Skeletal muscle
Sobotka 2016 Abstract IOC116		Sobotka O, Kucera Otto, Stankova P, Endlicher R, Nozickova K, Banni A, Cervinkova Z (2016) Mitochondrial respiration in fatty liver. Mitochondr Physiol Network 21.11	LEAK OXPHOS ET	F N S Gp CIV NS Other combinations ROX	Isolated mitochondria	Rat	Liver
Sobotka 2017 Abstract MITOEAGLE Barcelona		The effect of 24 weeks of high-fat and high-cholesterol diet on rat liver mitochondria. Sobotka_Presentation	OXPHOS ET	F N S Gp ROX	Isolated mitochondria	Rat	Liver
Sobotka 2017 Thesis	2017	Sobotka O (2017) Pharmacological and metabolic influence on liver mitochondrial functions. PhD Thesis p127.	LEAK OXPHOS ET	F N NS	Homogenate Isolated mitochondria Intact cells	Mouse Rat	Liver
Soliman 2020 Toxicology	2020	Soliman E, Elhassanny AEM, Malur A, McPeek M, Bell A, Leffler N, Van Dross R, Jones JL, Malur AG, Thomassen MJ (2020) Impaired mitochondrial function of alveolar macrophages in carbon nanotube-induced chronic pulmonary granulomatous disease. Toxicology 445:152598.	LEAK	F N	Permeabilized cells	Mouse	Lung;gill
Song 2020 Life Sci	2020	Song K, Zhang Y, Ga Q, Bai Z, Ge RL (2020) High-altitude chronic hypoxia ameliorates obesity-induced non-alcoholic fatty liver disease in mice by regulating mitochondrial and AMPK signaling. Life Sci 252:117633.	LEAK OXPHOS ET	F N NS	Homogenate	Mouse	Liver
Song 2020 Obes Facts	2020	Song K, Zhang Y, Ga Q, Bai Z, Ge RL (2020) Increased insulin sensitivity by high-altitude hypoxia in mice with high-fat diet-induced obesity is associated with activated AMPK signaling and subsequently enhanced mitochondrial biogenesis in skeletal muscles. Obes Facts 13:455-72.	LEAK OXPHOS	F N	Permeabilized tissue		Skeletal muscle
Sparks 2016 Diabetologia	2016	Sparks LM, Gemmink A, Phielix E, Bosma M, Schaart G, Moonen-Kornips E, Jörgensen JA, Nascimento EB, Hesselink MK, Schrauwen P, Hoeks J (2016) ANT1-mediated fatty acid-induced uncoupling as a target for improving myocellular insulin sensitivity. Diabetologia 59:1030-9.	LEAK OXPHOS ET	F N NS Other combinations	Permeabilized tissue Isolated mitochondria	Human Mouse Rat	Skeletal muscle Other cell lines
Stanford 2018 Cell Metab	2018	Stanford KI, Lynes MD, Takahashi H, Baer LA, Arts PJ, May FJ, Lehnig AC, Middelbeek RJW, Richard JJ, So K, Chen EY, Gao F, Narain NR, Distefano G, Shettigar VK, Hirshman MF, Ziolo MT, Kiebish MA, Tseng YH, Coen PM, Goodyear LJ (2018) 12,13-diHOME: an exercise-induced lipokine that increases skeletal muscle fatty acid uptake. Cell Metab 27:1111-20.	LEAK OXPHOS ET	F ROX	Permeabilized tissue	Human Mouse	Skeletal muscle
Stankova 2018 MiP2018		Impact of western diet on energy metabolism in mouse liver.	OXPHOS ET	S F N	Homogenate	Mouse	Liver
Stankova 2020 Int J Mol Sci	2020	Staňková P, Kučera O, Peterová E, Lotková H, Maseko TE, Nožičková K, Červinková Z (2020) Adaptation of mitochondrial substrate flux in a mouse model of nonalcoholic fatty liver disease. Int J Mol Sci 21:E1101.	LEAK OXPHOS	F N S Gp NS ROX	Homogenate	Mouse	Liver
Stein 2018 Cell Rep	2018	Stein CS, Jadiya P, Zhang X, McLendon JM, Abouassaly GM, Witmer NH, Anderson EJ, Elrod JW, Boudreau RL (2018) Mitoregulin: A lncRNA-encoded microprotein that supports mitochondrial supercomplexes and respiratory efficiency. Cell Rep 23:3710-20.	LEAK OXPHOS	F N	Permeabilized tissue	Human	Heart Skeletal muscle
Stephenson 2012 J Appl Physiol (1985)	2012	Stephenson EJ, Stepto NK, Koch LG, Britton SL, Hawley JA (2012) Divergent skeletal muscle respiratory capacities in rats artificially selected for high and low running ability: a role for Nor1? J Appl Physiol (1985) 113:1403-12.	LEAK OXPHOS ET	F N S CIV NS Other combinations ROX	Permeabilized tissue	Rat	Skeletal muscle
Stride 2012 Front Physiol	2012	Stride N, Larsen S, Treebak JT, Hansen CN, Hey-Mogensen M, Speerschneider T, Jensen TE, Jeppesen J, Wojtaszewski JF, Richter EA, Køber L, Dela F (2012) 5'-AMP activated protein kinase is involved in the regulation of myocardial β-oxidative capacity in mice. Front Physiol 3:33.	OXPHOS	F	Permeabilized tissue	Mouse	Heart
Sumbalova 2014 Abstract MiP2014		Optimization of malate concentration for high-resolution respirometry: mitochondria from rat liver and brain.	OXPHOS ET	F N S NS	Isolated mitochondria	Rat	Nervous system Liver
Sumbalova 2016 Abstract Mito Xmas Meeting Innsbruck		Methods for evaluation of mitochondrial membrane potential with multi-sensor high-resolution respirometry: potentiometry vs fluorometry.	LEAK OXPHOS ET	F N S NS ROX		Mouse	Nervous system
Sumbalova 2016b Abstract MitoFit Science Camp 2016		Human blood cells: isolation and HRR.	LEAK ROUTINE OXPHOS ET	F N S Gp CIV NS Other combinations ROX	Permeabilized cells Intact cells	Human	Blood cells Lymphocyte Platelet
Sumbalova 2019a MiP2019		Platelet mitochondrial function, coenzyme Q₁₀, and oxidative stress in patients with chronic kidney diseases.	LEAK OXPHOS	F N S Gp CIV NS ROX	Intact cells	Human	Platelet
Sumbalova 2019b MiP2019		The decline of mitochondrial respiration in isolated platelets after short-term storage.	LEAK OXPHOS	F N S Gp CIV NS ROX	Intact cells	Human	Platelet
Svensson 2017 Acta Physiol (Oxf)	2017	Svensson K, LaBarge SA, Martins VF, Schenk S (2017) Temporal overexpression of SIRT1 in skeletal muscle of adult mice does not improve insulin sensitivity or markers of mitochondrial biogenesis. Acta Physiol (Oxf) 221:193-203.	OXPHOS ET LEAK	F N S NS ROX	Permeabilized tissue	Mouse	Skeletal muscle
Svensson 2019 Am J Physiol Endocrinol Metab	2019	Svensson K, Tahvilian S, Martins VF, Dent JR, Lemanek A, Barooni N, Greyslak K, McCurdy CE, Schenk S (2019) Combined overexpression of SIRT1 and knockout of GCN5 in adult skeletal muscle does not affect glucose homeostasis or exercise performance in mice. Am J Physiol Endocrinol Metab 318:E145-51.	LEAK OXPHOS ET	F N S NS ROX	Permeabilized tissue	Mouse	Skeletal muscle
Szelechowski 2018 Sci Rep	2018	Szelechowski M, Amoedo N, Obre E, Léger C, Allard L, Bonneu M, Claverol S, Lacombe D, Oliet S, Chevallier S, Le Masson G, Rossignol R (2018) Metabolic reprogramming in amyotrophic lateral sclerosis. Sci Rep 8:3953.	LEAK ROUTINE ET	F ROX	Intact cells	Human	Endothelial;epithelial;mesothelial cell Fibroblast
Tahara 2009 Free Radic Biol Med	2009	Tahara EB, Navarete FD, Kowaltowski AJ (2009) Tissue-, substrate-, and site-specific characteristics of mitochondrial reactive oxygen species generation. Free Radic Biol Med 46:1283-97.	LEAK ET OXPHOS	F N NS ROX S Gp	Isolated mitochondria	Rat	Heart Skeletal muscle Nervous system Liver Kidney
Talati 2016 Am J Respir Crit Care Med	2016	Talati MH, Brittain EL, Fessel JP, Penner N, Atkinson J, Funke M, Grueter C, Jerome WG, Freeman M, Newman JH, West J, Hemnes AR (2016) Mechanisms of lipid accumulation in the bone morphogenetic protein receptor type 2 mutant right ventricle. Am J Respir Crit Care Med 194:719-28.	LEAK	F N	Permeabilized tissue	Mouse	Heart
Tarpey 2019 J Biol Chem	2019	Tarpey MD, Amorese AJ, Balestrieri NP, Fisher-Wellman KH, Spangenburg EE (2019) Doxorubicin causes lesions in the electron transport system of skeletal muscle mitochondria that are associated with a loss of contractile function. J Biol Chem 294:19709-22.	LEAK ET	F N S CIV	Permeabilized tissue Isolated mitochondria	Mouse	Skeletal muscle
Teulier 2016 Proc Biol Sci	2016	Teulier L, Weber JM, Crevier J, Darveau CA (2016) Proline as a fuel for insect flight: enhancing carbohydrate oxidation in hymenopterans. Proc Biol Sci 283: 20160333.	OXPHOS	F N S Gp NS Other combinations ROX	Permeabilized tissue	Hexapods	Skeletal muscle
Teulier 2019 Comp Biochem Physiol A Mol Integr Physiol	2019	Teulier L, Thoral E, Queiros Q, McKenzie DJ, Roussel D, Dutto G, Gasset E, Bourjea J, Saraux C (2019) Muscle bioenergetics of two emblematic Mediterranean fish species: Sardina pilchardus and Sparus aurata. Comp Biochem Physiol A Mol Integr Physiol 235:174-79.	LEAK OXPHOS ET	F N NS ROX	Intact cells	Fishes	Skeletal muscle
Thome 2020 JCI Insight	2020	Thome T, Kumar RA, Burke SK, Khattri RB, Salyers ZR, Kelley RC, Coleman MD, Christou DD, Hepple RT, Scali ST, Ferreira LF, Ryan TE (2020) Impaired muscle mitochondrial energetics is associated with uremic metabolite accumulation in chronic kidney disease. JCI Insight 6:e139826.	LEAK OXPHOS	F N S	Isolated mitochondria	Mouse	Skeletal muscle
Thome 2024 JCI Insight	2024	Thome T, Vugman NA, Stone LE, Wimberly K, Scali ST, Ryan TE (2024) A tryptophan-derived uremic metabolite-Ahr-Pdk4 axis governs skeletal muscle mitochondrial energetics in chronic kidney disease. JCI Insight [Epub ahead of print]. https://doi.org/10.1172/jci.insight.178372	LEAK OXPHOS	F N	Permeabilized tissue Isolated mitochondria	Human Mouse	Skeletal muscle
Thrush 2018 Int J Obes (Lond)	2018	Thrush AB, Antoun G, Nikpay M, Patten DA, DeVlugt C, Mauger JF, Beauchamp BL, Lau P, Reshke R, Doucet É, Imbeault P, Boushel R, Gibbings D, Hager J, Valsesia A, Slack R, Al-Dirbashi OY, Dent R, McPherson R, Harper ME (2018) Diet-resistant obesity is characterized by a distinct plasma proteomic signature and impaired muscle fiber metabolism. Int J Obes (Lond) 42:353-62.	LEAK OXPHOS ET	F N CIV NS ROX	Permeabilized tissue	Human	Skeletal muscle
Tian 2023 Redox Biol	2023	Tian G, Zhou J, Quan Y, Kong Q, Li J, Xin Y, Wu W, Tang X, Liu X (2023) Voltage-dependent anion channel 1 (VDAC1) overexpression alleviates cardiac fibroblast activation in cardiac fibrosis via regulating fatty acid metabolism. https://doi.org/10.1016/j.redox.2023.102907		F	Intact cells	Mouse	Heart Fibroblast
Tiebe 2019 Sci Rep	2019	Tiebe M, Lutz M, Senyilmaz Tiebe D, Teleman AA (2019) Crebl2 regulates cell metabolism in muscle and liver cells. Sci Rep 9:19869.	LEAK OXPHOS ROUTINE	F N Gp ROX	Permeabilized cells Intact cells	Mouse	Skeletal muscle Liver
Timmers 2011 Cell Metab	2011	Timmers S, Konings E, Bilet L, Houtkooper RH, van de Weijer T, Goossens GH, Hoeks J, van der Krieken S, Ryu D, Kersten S, Moonen-Kornips E, Hesselink MK, Kunz I, Schrauwen-Hinderling VB, Blaak EE, Auwerx J, Schrauwen P (2011) Calorie restriction-like effects of 30 days of resveratrol supplementation on energy metabolism and metabolic profile in obese humans. Cell Metab 14:612-22.	LEAK OXPHOS ET	F N NS Other combinations ROX	Permeabilized tissue	Human	Skeletal muscle
Timmers 2016 Diabetes Care	2016	Timmers S, de Ligt M, Phielix E, van de Weijer T, Hansen J, Moonen-Kornips E, Schaart G, Kunz I, Hesselink MK, Schrauwen-Hinderling VB, Schrauwen P (2016) Resveratrol as add-on therapy in subjects with well-controlled type 2 diabetes: a randomized controlled trial. Diabetes Care 39:2211-17.	LEAK ET OXPHOS	F N NS	Permeabilized tissue	Human	Skeletal muscle
Timon-Gomez 2023 EUROMIT2023 Bologna		Timon-Gomez A, Cardoso L, Baglivo E, Doerrier C, Gnaiger E (2023) Mitochondrial injury in warm ischemia studied by high-resolution respirometry. EUROMIT2023 International Conference on Mitochondrial Pathology.	OXPHOS ET	F N S Gp	Homogenate Isolated mitochondria Intact cells	Human Mouse	Heart Nervous system HEK
Toledo 2018 Obesity (Silver Spring)	2018	Toledo FGS, Dubé JJ, Goodpaster BH, Stefanovic-Racic M, Coen PM, DeLany JP (2018) Mitochondrial respiration is associated with lower energy expenditure and lower aerobic capacity in African American women. Obesity (Silver Spring) 26:903-9.	LEAK OXPHOS ET	F N NS	Permeabilized tissue	Human	Skeletal muscle
Tomar 2022 Biochim Biophys Acta Bioenerg	2022	Tomar N, Zhang X, Kandel SM, Sadri S, Yang C, Liang M, Audi SH, Cowley AW Jr, Dash RK (2022) Substrate-dependent differential regulation of mitochondrial bioenergetics in the heart and kidney cortex and outer medulla. https://doi.org/10.1016/j.bbabio.2021.148518	LEAK OXPHOS ET	F N S	Isolated mitochondria	Rat	Heart Kidney
Tonnesen 2021 Mol Cell Biochem	2021	Tonnesen PT, Hjortbak MV, Lassen TR, Seefeldt JM, Bøtker HE, Jespersen NR (2021) Myocardial salvage by succinate dehydrogenase inhibition in ischemia-reperfusion injury depends on diabetes stage in rats. Mol Cell Biochem 476:2675-84.	LEAK OXPHOS	F N	Permeabilized tissue	Rat	Heart